miRBase entry: ppy-mir-543

Stem-loop ppy-mir-543


Accession
MI0015041
Description
Pongo pygmaeus ppy-mir-543 precursor miRNA
Gene family
MIPF0000110; mir-329


Sequence

uacuuaaugagaaguugcccguguuuuuuucgcuuuauuugugacgAAACAUUCGCGGUGCACUUCUUuuucaguauc
((((.((.(((((((.(((((((..(.((((((.........).))))).)..))))).))))))))).)).))))..

Structure
--    u  u       u  -     uu u     - uuu 
  uacu aa gagaagu gc ccgug  u uuucg c   a
  |||| || ||||||| || |||||  | ||||| |   u
  auga uu UUCUUCA CG GGCGC  A AAAgc g   u
cu    c  u       -  U     UU C     a ugu 


Annotation confidence Not enough data
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Genome context
chr14: 102593436-102593513 [+]
Clustered miRNAs
17 other miRNAs are < 10 kb from ppy-mir-543
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ppy-miR-543

Accession MIMAT0015993
Description Pongo pygmaeus ppy-miR-543 mature miRNA
Sequence 47 - AAACAUUCGCGGUGCACUUCUU - 68
Evidence not_experimental

References

  1. PubMed ID: 20214803
    Genome-wide comparative analysis of microRNAs in three non-human primates
    Brameier M
    BMC Res Notes (2010) 3:64