miRBase entry: ppy-mir-532

Stem-loop ppy-mir-532

Accession

MI0015037

Description

Pongo pygmaeus ppy-mir-532 precursor miRNA

Gene family

MIPF0000113; mir-188

Sequence

cgacuugcuuucucuccucCAUGCCUUGAGUGUAGGACCGUuggcaucuuaauuacCCUCCCACACCCAAGGCUUGCAgaagagcgagccu
......((((.((((.((.((.((((((.((((.(((..((.............))..))).)))).)))))).)).)).)))).))))..

Structure

cgacuu    u    c  c  U      A    A   CC  uggca 
      gcuu cucu cu CA GCCUUG GUGU GGA  GU     u
      |||| |||| || || |||||| |||| |||  ||     c
      cgag gaga gA GU CGGAAC CACA CCU  ca     u
----uc    c    a  C  U      C    C   CC  uuaau

Annotation confidence Not enough data

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Genome context

chrX: 50535905-50535995 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from ppy-mir-532

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ppy-miR-532-5p

Accession	MIMAT0015987
Description	Pongo pygmaeus ppy-miR-532-5p mature miRNA
Sequence	20 - CAUGCCUUGAGUGUAGGACCGU - 41
Evidence	not_experimental

Mature ppy-miR-532-3p

Accession	MIMAT0015988
Description	Pongo pygmaeus ppy-miR-532-3p mature miRNA
Sequence	57 - CCUCCCACACCCAAGGCUUGCA - 78
Evidence	not_experimental

References

PubMed ID: 20214803
Genome-wide comparative analysis of microRNAs in three non-human primates
Brameier M
BMC Res Notes (2010) 3:64