miRBase entry: ppy-mir-524

Stem-loop ppy-mir-524

Accession

MI0015031

Description

Pongo pygmaeus ppy-mir-524 precursor miRNA

Gene family

MIPF0000020; mir-515

Sequence

ucucaugcugugaccCUACAAAGGGAAGCACUUUCUCuugucuaaaggaaaaGAAGGCGCUUCCCUUUGGAGUguuacgguuugaga
(((((.((((((((.((.(((((((((((.(((((((((......))))...))))).))))))))))).)).)))))))).)))))

Structure

     u        c  A           A     ---    gu 
ucuca gcugugac CU CAAAGGGAAGC CUUUC   UCuu  c
||||| |||||||| || ||||||||||| |||||   ||||   
agagu uggcauug GA GUUUCCCUUCG GGAAG   agga  u
     u        U  G           C     aaa    aa

Annotation confidence Not enough data

Do you think this miRNA is real?

Genome context

chr19: 55484611-55484697 [+]

Clustered miRNAs

11 other miRNAs are < 10 kb from ppy-mir-524

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ppy-miR-524-5p

Accession	MIMAT0015980
Description	Pongo pygmaeus ppy-miR-524-5p mature miRNA
Sequence	16 - CUACAAAGGGAAGCACUUUCUC - 37
Evidence	not_experimental

Mature ppy-miR-524-3p

Accession	MIMAT0015981
Description	Pongo pygmaeus ppy-miR-524-3p mature miRNA
Sequence	53 - GAAGGCGCUUCCCUUUGGAGU - 73
Evidence	not_experimental

References

PubMed ID: 20214803
Genome-wide comparative analysis of microRNAs in three non-human primates
Brameier M
BMC Res Notes (2010) 3:64