miRBase entry: ppy-mir-520f

Stem-loop ppy-mir-520f

Accession

MI0015024

Description

Pongo pygmaeus ppy-mir-520f precursor miRNA

Gene family

MIPF0000020; mir-515

Sequence

ucucaggcugugacccucuaaagggaagcacuuucuguggucagaaagaaaagcAAGUGCUUCCUUUUAGAGGGUUaccguuuggga
((((((((.((((((((((((((((((((((((((((....)))).........)))))))))))))))))))))))).))))))))

Structure

        u                        ---------    u 
ucucaggc gugacccucuaaagggaagcacuu         ucug g
|||||||| ||||||||||||||||||||||||         ||||  
aggguuug caUUGGGAGAUUUUCCUUCGUGAA         agac g
        c                        cgaaaagaa    u

Annotation confidence Not enough data

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Genome context

chr19: 55457107-55457193 [+]

Clustered miRNAs

8 other miRNAs are < 10 kb from ppy-mir-520f

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ppy-miR-520f

Accession	MIMAT0015974
Description	Pongo pygmaeus ppy-miR-520f mature miRNA
Sequence	55 - AAGUGCUUCCUUUUAGAGGGUU - 76
Evidence	not_experimental

References

PubMed ID: 20214803
Genome-wide comparative analysis of microRNAs in three non-human primates
Brameier M
BMC Res Notes (2010) 3:64