miRBase entry: ppy-mir-520c

Stem-loop ppy-mir-520c


Accession
MI0015021
Description
Pongo pygmaeus ppy-mir-520c precursor miRNA
Gene family
MIPF0000020; mir-515


Sequence

ucucaggcugugaucCUCUGGAAGGAAGCACUUUCUGuugucugaaagaaaagAAAGUGCUUCCUUUUAGAGGGUuaccguuugaga
((((((((.(((((((((((((((((((((((((((....(((...)))..))))))))))))))))))))))))))).))))))))

Structure
        u                           Guug   g 
ucucaggc gugaucCUCUGGAAGGAAGCACUUUCU    ucu  
|||||||| |||||||||||||||||||||||||||    ||| a
agaguuug cauUGGGAGAUUUUCCUUCGUGAAAga    aga  
        c                           --aa   a 


Annotation confidence Not enough data
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Genome context
chr19: 55481357-55481443 [+]
Clustered miRNAs
10 other miRNAs are < 10 kb from ppy-mir-520c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ppy-miR-520c-5p

Accession MIMAT0015969
Description Pongo pygmaeus ppy-miR-520c-5p mature miRNA
Sequence 16 - CUCUGGAAGGAAGCACUUUCUG - 37
Evidence not_experimental

Mature ppy-miR-520c-3p

Accession MIMAT0015970
Description Pongo pygmaeus ppy-miR-520c-3p mature miRNA
Sequence 54 - AAAGUGCUUCCUUUUAGAGGGU - 75
Evidence not_experimental

References

  1. PubMed ID: 20214803
    Genome-wide comparative analysis of microRNAs in three non-human primates
    Brameier M
    BMC Res Notes (2010) 3:64