miRBase entry: ppy-mir-520a

Stem-loop ppy-mir-520a


Accession
MI0015019
Description
Pongo pygmaeus ppy-mir-520a precursor miRNA
Gene family
MIPF0000020; mir-515


Sequence

cucaggcugugaccCUCCAGAGGGAAGUACUUUCUguugucugagagaaaagAAAGUGCUUCCCUUUGGACUGUuucgguu
....(((((.(((..((((((((((((((((((((.((.((...)).)).))))))))))))))))))))..))).)))))

Structure
cuca     u   cC                    g  g  u 
    ggcug gac  UCCAGAGGGAAGUACUUUCU uu uc  
    ||||| |||  |||||||||||||||||||| || || g
    uuggc uUG  AGGUUUCCCUUCGUGAAAga aa ag  
----     u   UC                    a  g  a 


Annotation confidence Not enough data
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Genome context
chr19: 55466122-55466202 [+]
Clustered miRNAs
9 other miRNAs are < 10 kb from ppy-mir-520a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ppy-miR-520a-5p

Accession MIMAT0015966
Description Pongo pygmaeus ppy-miR-520a-5p mature miRNA
Sequence 15 - CUCCAGAGGGAAGUACUUUCU - 35
Evidence not_experimental

Mature ppy-miR-520a-3p

Accession MIMAT0015967
Description Pongo pygmaeus ppy-miR-520a-3p mature miRNA
Sequence 53 - AAAGUGCUUCCCUUUGGACUGU - 74
Evidence not_experimental

References

  1. PubMed ID: 20214803
    Genome-wide comparative analysis of microRNAs in three non-human primates
    Brameier M
    BMC Res Notes (2010) 3:64