miRBase entry: ppy-mir-518f-1

Stem-loop ppy-mir-518f-1


Accession
MI0015012
Description
Pongo pygmaeus ppy-mir-518f-1 precursor miRNA
Gene family
MIPF0000020; mir-515


Sequence

ucucaugcugugacccucuagagggaagcacuuucucuugucuaaaagaaaaGAAAGCGCUUCUCUUUAGAGGauuacucuuugaga
(((((....((((.(((((((((((((((.(((((((((......))))...))))).))))))))))))))).))))....)))))

Structure
     ugcu    c               a     ---    gu 
ucuca    guga ccucuagagggaagc cuuuc   ucuu  c
|||||    |||| ||||||||||||||| |||||   ||||   
agagu    cauu GGAGAUUUCUCUUCG GAAAG   agaa  u
     uucu    a               C     aaa    aa 


Annotation confidence Not enough data
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Genome context
chr19: 55475773-55475859 [+]
Clustered miRNAs
10 other miRNAs are < 10 kb from ppy-mir-518f-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ppy-miR-518f

Accession MIMAT0015957
Description Pongo pygmaeus ppy-miR-518f mature miRNA
Sequence 53 - GAAAGCGCUUCUCUUUAGAGG - 73
Evidence not_experimental

Mature ppy-miR-518f

Accession MIMAT0015958
Description Pongo pygmaeus ppy-miR-518f mature miRNA
Sequence 53 - GAAAGCGCUUCUCUUUAGAGG - 73
Evidence not_experimental

References

  1. PubMed ID: 20214803
    Genome-wide comparative analysis of microRNAs in three non-human primates
    Brameier M
    BMC Res Notes (2010) 3:64