Stem-loop ppy-mir-518c

Accession

MI0015009

Description

Pongo pygmaeus ppy-mir-518c precursor miRNA

Gene family

MIPF0000020; mir-515

Sequence

gcgagaagaucucaugcugugacucucuggagggaagcacuuucuguugucugaaagaaaaCAAAGCGCUUCUCUUUAGAGUGUuacgguuugagaaaagc
.........(((((.((((((((.((((((((((((((.(((..((((.(((...))).))))))).)))))))))))))).)))))))).))))).....

Structure

gcgagaaga     u        u              a   uc    g   g 
         ucuca gcugugac cucuggagggaagc cuu  uguu ucu  
         ||||| |||||||| |||||||||||||| |||  |||| ||| a
         agagu uggcauUG GAGAUUUCUCUUCG GAA  ACaa aga  
----cgaaa     u        U              C   --    a   a 

Annotation confidence Not enough data

Genome context

chr19: 55482645-55482745 [+]

Clustered miRNAs

11 other miRNAs are < 10 kb from ppy-mir-518c

Mature ppy-miR-518c

• Accession: MIMAT0015954
• Description: Pongo pygmaeus ppy-miR-518c mature miRNA
• Sequence: 62 - CAAAGCGCUUCUCUUUAGAGUGU - 84
• Evidence: not_experimental

References

1. PubMed ID: 20214803
   Genome-wide comparative analysis of microRNAs in three non-human primates
   Brameier M
   BMC Res Notes (2010) 3:64