miRBase entry: ppy-mir-517a

Stem-loop ppy-mir-517a


Accession
MI0015003
Description
Pongo pygmaeus ppy-mir-517a precursor miRNA
Gene family
MIPF0000020; mir-515


Sequence

ucucaggcagugacccucuagauggaagcacugucuguuguauaaaagaaaagAUCGUGCAUCCCUUUAGAGUGUuacuguuugaga
((((((((((((((.(((((((.(((.((((.((((...............)))).)))).))).))))))).))))))))))))))

Structure
              c       u   a    u    guugua 
ucucaggcagugac cucuaga gga gcac gucu      u
|||||||||||||| ||||||| ||| |||| ||||      a
agaguuugucauUG GAGAUUU CCU CGUG UAga      a
              U       C   A    C    aaagaa 


Annotation confidence Not enough data
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Genome context
chr19: 55485875-55485961 [+]
Clustered miRNAs
10 other miRNAs are < 10 kb from ppy-mir-517a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ppy-miR-517a

Accession MIMAT0015948
Description Pongo pygmaeus ppy-miR-517a mature miRNA
Sequence 54 - AUCGUGCAUCCCUUUAGAGUGU - 75
Evidence not_experimental

References

  1. PubMed ID: 20214803
    Genome-wide comparative analysis of microRNAs in three non-human primates
    Brameier M
    BMC Res Notes (2010) 3:64