miRBase entry: ppy-mir-516a-1

Stem-loop ppy-mir-516a-1

Accession

MI0014999

Description

Pongo pygmaeus ppy-mir-516a-1 precursor miRNA

Gene family

MIPF0000020; mir-515

Sequence

ucucaggcugugaccUUCUCGAGGAAAGAAGCACUUUCuguugucugaaagaaaagaaagUGCUUCCUUUCAGAGAGUuacgguuugaga
((((((((((((((..((((..((((.((((((((((((....(((...)))..)))))))))))).)))).))))))))))))))))))

Structure

              cU    GA    A            guug   g 
ucucaggcugugac  UCUC  GGAA GAAGCACUUUCu    ucu  
||||||||||||||  ||||  |||| ||||||||||||    ||| a
agaguuuggcauUG  AGAG  CUUU CUUCGUgaaaga    aga  
              --    -A    C            --aa   a

Annotation confidence Not enough data

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Genome context

chr19: 55541606-55541695 [+]

Clustered miRNAs

4 other miRNAs are < 10 kb from ppy-mir-516a-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ppy-miR-516a-5p

Accession	MIMAT0015945
Description	Pongo pygmaeus ppy-miR-516a-5p mature miRNA
Sequence	16 - UUCUCGAGGAAAGAAGCACUUUC - 38
Evidence	not_experimental

Mature ppy-miR-516a-3p

Accession	MIMAT0015946
Description	Pongo pygmaeus ppy-miR-516a-3p mature miRNA
Sequence	61 - UGCUUCCUUUCAGAGAGU - 78
Evidence	not_experimental

References

PubMed ID: 20214803
Genome-wide comparative analysis of microRNAs in three non-human primates
Brameier M
BMC Res Notes (2010) 3:64