miRBase entry: ppy-mir-513a-2

Stem-loop ppy-mir-513a-2


Accession
MI0014991
Description
Pongo pygmaeus ppy-mir-513a-2 precursor miRNA
Gene family
MIPF0000130; mir-506


Sequence

ggaugccacauucagccauucagugugcagugccuUUCACAGGGAGGUGUCAUuuaugugaacuaaaauaUAAAUUUCACCUUUCUGAGAAGgguaauguacagcaugcacugcguauguggugucc
(((((((((((.(((.(((....((((((.((((((((.((((((((((..((((((((........))))))))..)))))))))).)))))))).))))))..)))..)))...)))))))))))

Structure
           --u   -c   ucag      g        A          UC        gaa 
ggaugccacau   cag  cau    ugugca ugccuUUC CAGGGAGGUG  AUuuaugu   c
|||||||||||   |||  |||    |||||| |||||||| ||||||||||  ||||||||    
ccuguggugua   guc  gua    acaugu auggGAAG GUCUUUCCAC  UAAAUaua   u
           ugc   ac   --cg      a        A          UU        aaa 


Annotation confidence Not enough data
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Genome context
chrX: 147110689-147110815 [-]
Clustered miRNAs
3 other miRNAs are < 10 kb from ppy-mir-513a-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ppy-miR-513a-5p

Accession MIMAT0015938
Description Pongo pygmaeus ppy-miR-513a-5p mature miRNA
Sequence 36 - UUCACAGGGAGGUGUCAU - 53
Evidence not_experimental

Mature ppy-miR-513a-2-3p

Accession MIMAT0016978
Description Pongo pygmaeus ppy-miR-513a-2-3p mature miRNA
Sequence 71 - UAAAUUUCACCUUUCUGAGAAG - 92
Evidence not_experimental

References

  1. PubMed ID: 20214803
    Genome-wide comparative analysis of microRNAs in three non-human primates
    Brameier M
    BMC Res Notes (2010) 3:64