miRBase entry: ppy-mir-513a-1

Stem-loop ppy-mir-513a-1

Accession

MI0014990

Description

Pongo pygmaeus ppy-mir-513a-1 precursor miRNA

Gene family

MIPF0000130; mir-506

Sequence

gggaugccacauucagccauucaguguacagugccuUUCACAGGGAGGUGUCAUuuaugugaacuaaaauaUAAAUCUCACCUUUCUGAGAAGaguaauguacagcaugcacugcauaugugguguccc
((((((((((((.(((.(((....((((((.(((.((((.((((((((((..((((((((........))))))))..)))))))))).)))).))).))))))..)))..)))...))))))))))))

Structure

            --u   -c   ucag      g   c    A          UC        gaa 
gggaugccacau   cag  cau    uguaca ugc uUUC CAGGGAGGUG  AUuuaugu   c
||||||||||||   |||  |||    |||||| ||| |||| ||||||||||  ||||||||    
cccuguggugua   guc  gua    acaugu aug GAAG GUCUUUCCAC  UAAAUaua   u
            uac   ac   --cg      a   a    A          UC        aaa

Annotation confidence Not enough data

Do you think this miRNA is real?

Genome context

chrX: 147101263-147101391 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ppy-mir-513a-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ppy-miR-513a-5p

Accession	MIMAT0015938
Description	Pongo pygmaeus ppy-miR-513a-5p mature miRNA
Sequence	37 - UUCACAGGGAGGUGUCAU - 54
Evidence	not_experimental

Mature ppy-miR-513a-1-3p

Accession	MIMAT0015939
Description	Pongo pygmaeus ppy-miR-513a-1-3p mature miRNA
Sequence	72 - UAAAUCUCACCUUUCUGAGAAG - 93
Evidence	not_experimental

References

PubMed ID: 20214803
Genome-wide comparative analysis of microRNAs in three non-human primates
Brameier M
BMC Res Notes (2010) 3:64