miRBase entry: ppy-mir-508

Stem-loop ppy-mir-508

Accession

MI0014981

Description

Pongo pygmaeus ppy-mir-508 precursor miRNA

Gene family

MIPF0000130; mir-506

Sequence

ccaccuucagcugaguguagugcccUACUCCAGAGGGCGUCACUCACGuaaacuaaaacaUGAUUGUAGCCUUUUUGAGUAGAguaauacacaucacguaaggcauauuuggugg
(((((....((((((((((.(((.((((((.(((((((..((.(((.((........)).))).))..))))))).)))))).))).))))).))......)))......)))))

Structure

     --uuca   ------  -     g   c      C       GU  C   C  aaa 
ccacc      gcu      ga gugua ugc cUACUC AGAGGGC  CA UCA Gu   c
|||||      |||      || ||||| ||| |||||| |||||||  || ||| ||    
ggugg      cgg      cu cacau aug GAUGAG UUUUCCG  GU AGU ca   u
     uuuaua   aaugca  a     a   A      U       AU  U   a  aaa

Annotation confidence Not enough data

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Genome context

chrX: 147125085-147125199 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from ppy-mir-508

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ppy-miR-508-5p

Accession	MIMAT0015931
Description	Pongo pygmaeus ppy-miR-508-5p mature miRNA
Sequence	26 - UACUCCAGAGGGCGUCACUCACG - 48
Evidence	not_experimental

Mature ppy-miR-508-3p

Accession	MIMAT0015932
Description	Pongo pygmaeus ppy-miR-508-3p mature miRNA
Sequence	61 - UGAUUGUAGCCUUUUUGAGUAGA - 83
Evidence	not_experimental

References

PubMed ID: 20214803
Genome-wide comparative analysis of microRNAs in three non-human primates
Brameier M
BMC Res Notes (2010) 3:64