miRBase entry: ppy-mir-506

Stem-loop ppy-mir-506


Accession
MI0014979
Description
Pongo pygmaeus ppy-mir-506 precursor miRNA
Gene family
MIPF0000130; mir-506


Sequence

gccaccaccaucagcuacgcuauguguagugccuuauucaggaagguguuacuuaauagauuaauauuugUAAGGCACCCUUCUGAGUAGAguaaugugcaacauggacaacauuugugguggc
((((((((.....(((((((...)))))))((.((((((((((.(((((..((((.(((((....)))))))))))))).)))))))))).))..(((.((...)).)))......))))))))

Structure
        -caucagcuacgcuauguguagu  c          a     ua    a     u 
gccaccac                       gc uuauucagga ggugu  cuua uagau a
||||||||                       || |||||||||| |||||  |||| |||||  
cgguggug                       ug GAUGAGUCUU CCACG  GAAU guuua a
        uuuacaacagguacaacguguaa  A          C     --    -     u 


Annotation confidence Not enough data
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Genome context
chrX: 147115915-147116038 [-]
Clustered miRNAs
3 other miRNAs are < 10 kb from ppy-mir-506
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ppy-miR-506

Accession MIMAT0015929
Description Pongo pygmaeus ppy-miR-506 mature miRNA
Sequence 71 - UAAGGCACCCUUCUGAGUAGA - 91
Evidence not_experimental

References

  1. PubMed ID: 20214803
    Genome-wide comparative analysis of microRNAs in three non-human primates
    Brameier M
    BMC Res Notes (2010) 3:64