miRBase entry: ppy-mir-487a

Stem-loop ppy-mir-487a

Accession

MI0014959

Description

Pongo pygmaeus ppy-mir-487a precursor miRNA

Gene family

MIPF0000018; mir-154

Sequence

gguacuugaagagugguuaucccugcuguguucgcuuaauuuaugacgAAUCAUACAGGGACAUCCAGUUuuucaguauc
((((((.(((((.(((...((((((.(((((((((.........).)))).))))))))))...))).))))).))))))

Structure

      u     g   uua      c    -    - uua 
gguacu gaaga ugg   ucccug ugug uucg c   a
|||||| ||||| |||   |||||| |||| |||| |   u
cuauga uuuUU ACC   AGGGAC AUAC AAgc g   u
      c     G   UAC      -    U    a uau

Annotation confidence Not enough data

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Genome context

chr14: 102614611-102614690 [+]

Clustered miRNAs

15 other miRNAs are < 10 kb from ppy-mir-487a

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ppy-miR-487a

Accession	MIMAT0015905
Description	Pongo pygmaeus ppy-miR-487a mature miRNA
Sequence	49 - AAUCAUACAGGGACAUCCAGUU - 70
Evidence	not_experimental

References

PubMed ID: 20214803
Genome-wide comparative analysis of microRNAs in three non-human primates
Brameier M
BMC Res Notes (2010) 3:64