miRBase entry: ppy-mir-485

Stem-loop ppy-mir-485


Accession
MI0014957
Description
Pongo pygmaeus ppy-mir-485 precursor miRNA
Gene family
MIPF0000201; mir-485


Sequence

acuuggagAGAGGCUGGCCGUGAUGAAUUCgauucaucaaagcgaGUCAUACACGGCUCUCCUCUCUuuuagu
(((.(((((((((..(((((((((((.((((...........)))))))).)))))))..))))))))).)))

Structure
   u         CU       -    A    auuc 
acu ggagAGAGG  GGCCGUG AUGA UUCg    a
||| |||||||||  ||||||| |||| ||||    u
uga uuUCUCUCC  UCGGCAC UACU Gagc    c
   u         UC       A    -    gaaa 


Annotation confidence Not enough data
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Genome context
chr14: 102618120-102618192 [+]
Clustered miRNAs
15 other miRNAs are < 10 kb from ppy-mir-485
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ppy-miR-485-5p

Accession MIMAT0015902
Description Pongo pygmaeus ppy-miR-485-5p mature miRNA
Sequence 9 - AGAGGCUGGCCGUGAUGAAUUC - 30
Evidence not_experimental

Mature ppy-miR-485-3p

Accession MIMAT0015903
Description Pongo pygmaeus ppy-miR-485-3p mature miRNA
Sequence 46 - GUCAUACACGGCUCUCCUCUCU - 67
Evidence not_experimental

References

  1. PubMed ID: 20214803
    Genome-wide comparative analysis of microRNAs in three non-human primates
    Brameier M
    BMC Res Notes (2010) 3:64