miRBase entry: ppy-mir-449b

Stem-loop ppy-mir-449b

Accession

MI0014948

Description

Pongo pygmaeus ppy-mir-449b precursor miRNA

Gene family

MIPF0000133; mir-449

Sequence

ugaccugaaucagguAGGCAGUGUAUUGUUAGCUGGCugcuuuggucaagucagcagccacaacuacccugccacuugcuucuggauaaauucuucu
...((.(((.(((((.(((((.(((..(((.(.((((((((...........))))))))))))))).)))))))))).))).))............

Structure

---------uga  u   u     A     U   UU   A C        uugg 
            cc gaa caggu GGCAG GUA  GUU G UGGCugcu    u
            || ||| ||||| ||||| |||  ||| | ||||||||    c
            gg cuu guuca ccguc cau  caa c accgacga    a
ucuucuuaaaua  u   c     -     c   --   - -        cuga

Annotation confidence Not enough data

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Genome context

chr5: 56431862-56431958 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ppy-mir-449b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ppy-miR-449b

Accession	MIMAT0015892
Description	Pongo pygmaeus ppy-miR-449b mature miRNA
Sequence	16 - AGGCAGUGUAUUGUUAGCUGGC - 37
Evidence	not_experimental

References

PubMed ID: 20214803
Genome-wide comparative analysis of microRNAs in three non-human primates
Brameier M
BMC Res Notes (2010) 3:64