miRBase entry: ppy-mir-342

Stem-loop ppy-mir-342

Accession

MI0014905

Description

Pongo pygmaeus ppy-mir-342 precursor miRNA

Gene family

MIPF0000190; mir-342

Sequence

gaaacugggcucaaggugAGGGGUGCUAUCUGUGAUUGAgggacaugguuaauggaauugUCUCACACAGAAAUCGCACCCGUcaccuuggccuacuua
.....(((((.((((((((.((((((..((((((..(((((.((((.....)))....).)))))))))))....)))))).)))))))))))))....

Structure

gaaac     u        G      --UA      AU     g ----   g 
     ugggc caaggugA GGGUGC    UCUGUG  UGAgg a    cau g
     ||||| |||||||| ||||||    ||||||  ||||| |    ||| u
     auccg guuccacU CCCACG    AGACAC  ACUCU u    gua u
-auuc     -        G      CUAA      --     g uaag   a

Annotation confidence Not enough data

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Genome context

chr14: 101636286-101636384 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ppy-mir-342

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ppy-miR-342-5p

Accession	MIMAT0015844
Description	Pongo pygmaeus ppy-miR-342-5p mature miRNA
Sequence	19 - AGGGGUGCUAUCUGUGAUUGA - 39
Evidence	not_experimental

Mature ppy-miR-342-3p

Accession	MIMAT0015845
Description	Pongo pygmaeus ppy-miR-342-3p mature miRNA
Sequence	61 - UCUCACACAGAAAUCGCACCCGU - 83
Evidence	not_experimental

References

PubMed ID: 20214803
Genome-wide comparative analysis of microRNAs in three non-human primates
Brameier M
BMC Res Notes (2010) 3:64