miRBase entry: ppy-mir-193a

Stem-loop ppy-mir-193a


Accession
MI0014855
Description
Pongo pygmaeus ppy-mir-193a precursor miRNA
Gene family
MIPF0000082; mir-193


Sequence

cgaggaugggagcugagggcUGGGUCUUUGCGGGCGAGAUGAaggugucggaucAACUGGCCUACAAAGUCCCAGUccucggcccccg
.......(((.(((((((((((((.(((((.((((.((.(((..........))).)).)))).))))).))))))))))))).))).

Structure
cgaggau   a             U     C    G  A   aggu 
       ggg gcugagggcUGGG CUUUG GGGC AG UGA    g
       ||| ||||||||||||| ||||| |||| || |||     
       ccc cggcuccUGACCC GAAAC UCCG UC Acu    u
------g   c             U     A    G  A   aggc 


Annotation confidence Not enough data
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Genome context
chr17: 26401697-26401784 [+]

Database links

Mature ppy-miR-193a-5p

Accession MIMAT0015787
Description Pongo pygmaeus ppy-miR-193a-5p mature miRNA
Sequence 21 - UGGGUCUUUGCGGGCGAGAUGA - 42
Evidence not_experimental

Mature ppy-miR-193a-3p

Accession MIMAT0015788
Description Pongo pygmaeus ppy-miR-193a-3p mature miRNA
Sequence 55 - AACUGGCCUACAAAGUCCCAGU - 76
Evidence not_experimental

References

  1. PubMed ID: 20214803
    Genome-wide comparative analysis of microRNAs in three non-human primates
    Brameier M
    BMC Res Notes (2010) 3:64