miRBase entry: ppy-mir-125a

Stem-loop ppy-mir-125a

Accession

MI0014817

Description

Pongo pygmaeus ppy-mir-125a precursor miRNA

Gene family

MIPF0000033; mir-10

Sequence

ugccagucucuaggUCCCUGAGACCCUUUAACCUGUGAggacauccagggucACAGGUGAGGUUCUUGGGAGCCuggcgucuggcc
.(((((.(.((((((.(((((((.((((..((((((((((....))....)))))))))))).))))))).)))))).).))))).

Structure

u     u u      C       C    UA        ----  a 
 gccag c cuaggU CCUGAGA CCUU  ACCUGUGA    gg c
 ||||| | |||||| ||||||| ||||  ||||||||    ||  
 cgguc g gguCCG GGGUUCU GGAG  UGGACAcu    cc a
c     u c      A       U    --        ggga  u

Annotation confidence Not enough data

Do you think this miRNA is real?

Genome context

chr19: 53227066-53227151 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ppy-mir-125a

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ppy-miR-125a-5p

Accession	MIMAT0015748
Description	Pongo pygmaeus ppy-miR-125a-5p mature miRNA
Sequence	15 - UCCCUGAGACCCUUUAACCUGUGA - 38
Evidence	not_experimental

Mature ppy-miR-125a-3p

Accession	MIMAT0015749
Description	Pongo pygmaeus ppy-miR-125a-3p mature miRNA
Sequence	53 - ACAGGUGAGGUUCUUGGGAGCC - 74
Evidence	not_experimental

References

PubMed ID: 20214803
Genome-wide comparative analysis of microRNAs in three non-human primates
Brameier M
BMC Res Notes (2010) 3:64