miRBase entry: ppy-mir-30c-1

Stem-loop ppy-mir-30c-1


Accession
MI0014803
Description
Pongo pygmaeus ppy-mir-30c-1 precursor miRNA
Gene family
MIPF0000005; mir-30


Sequence

accaugcuguagugugUGUAAACAUCCUACACUCUCAGCugugagcucaagguggcugggagaggguuguuuacuccuucugccaugga
.(((((..((((...(.(((((((.(((...(((((((((....(((...)))))))))))).))).))))))).)...))))))))).

Structure
a     cu    ugu U       U   ACA         guga   c 
 ccaug  guag   g GUAAACA CCU   CUCUCAGCu    gcu  
 |||||  ||||   | ||||||| |||   |||||||||    ||| a
 gguac  cguc   c cauuugu ggg   gagggucgg    ugg  
a     --    uuc u       u   --a         ----   a 


Annotation confidence Not enough data
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Genome context
chr1: 189330565-189330653 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from ppy-mir-30c-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ppy-miR-30c

Accession MIMAT0015737
Description Pongo pygmaeus ppy-miR-30c mature miRNA
Sequence 17 - UGUAAACAUCCUACACUCUCAGC - 39
Evidence not_experimental

References

  1. PubMed ID: 20214803
    Genome-wide comparative analysis of microRNAs in three non-human primates
    Brameier M
    BMC Res Notes (2010) 3:64