miRBase entry: ppy-let-7f-1

Stem-loop ppy-let-7f-1


Accession
MI0014786
Description
Pongo pygmaeus ppy-let-7f-1 precursor miRNA
Gene family
MIPF0000002; let-7

Literature search
2 open access papers mention ppy-let-7f-1
(5 sentences)

Sequence

ucagagUGAGGUAGUAGAUUGUAUAGUUgugggguagugauuuuacccuguucaggagauaacuauacaaucuauugccuucccuga
((((.(.((((((((((((((((((((((((((((((.....))))))).........))))))))))))))))))))))).)))))

Structure
    a U                       ---------       u 
ucag g GAGGUAGUAGAUUGUAUAGUUgu         gggguag g
|||| | |||||||||||||||||||||||         ||||||| a
aguc c uuccguuaucuaacauaucaaua         ucccauu u
    - c                       gaggacuug       u 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr9: 89895138-89895224 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from ppy-let-7f-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ppy-let-7f

Accession MIMAT0015726
Description Pongo pygmaeus ppy-let-7f mature miRNA
Sequence 7 - UGAGGUAGUAGAUUGUAUAGUU - 28
Evidence not_experimental

References

  1. PubMed ID: 20214803
    Genome-wide comparative analysis of microRNAs in three non-human primates
    Brameier M
    BMC Res Notes (2010) 3:64