Stem-loop sequence ssc-mir-450c

Accession

MI0014776 (change log)

Description

Sus scrofa miR-450c stem-loop

Gene family

MIPF0000128; mir-450

Literature search

4 open access papers mention ssc-mir-450c
(4 sentences)

Stem-loop

        u       uuu     u              uaa 
5' ggcac aaacuau   ugcga guguuccuaauacg   u
   ||||| |||||||   ||||| ||||||||||||||   c
3' cugug uuugaug   acguu uacaaggguuaugu   u
        u       cuu     u              gaa 

Deep sequencing

4935 reads, 553 reads per million, 15 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Sscrofa10.2; GCA_000003025.4): chrUScaf3177: 4053-4133 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from ssc-mir-450c

• ssc-mir-542: chrUScaf3177: 3348-3427 [+]
• ssc-mir-450c: chrUScaf3177: 4053-4133 [+]
• ssc-mir-450a: chrUScaf3177: 4173-4278 [+]
• ssc-mir-450b: chrUScaf3177: 4358-4437 [+]

Database links

• EntrezGene:MIR450C
• miRBase Tracker:MI0014776

Mature sequence ssc-miR-450c-5p

• Accession: MIMAT0015717
• Previous IDs: ssc-miR-450c
• Sequence: 14 - uuuugcgauguguuccuaauac - 35
• Deep sequencing: 4840 reads, 15 experiments
• Evidence: experimental; Illumina [2]

Mature sequence ssc-miR-450c-3p

• Accession: MIMAT0015718
• Previous IDs: ssc-miR-450c*
• Sequence: 49 - auugggaacauuuugcauucgu - 70
• Deep sequencing: 95 reads, 10 experiments
• Evidence: experimental; cloned [1], Illumina [2]

References

1. PMID:20180025 "Cloning and characterization of microRNAs from porcine skeletal muscle and adipose tissue" Cho IS, Kim J, Seo HY, Lim DH, Hong JS, Park YH, Park DC, Hong KC, Whang KY, Lee YS Mol Biol Rep. 37:3567-3574(2010).
2. PMID:21312241 "MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing" Li G, Li Y, Li X, Ning X, Li M, Yang G J Cell Biochem. 112:1318-1328(2011).