Stem-loop sequence ssc-mir-450c

AccessionMI0014776 (change log)
DescriptionSus scrofa miR-450c stem-loop
Gene family MIPF0000128; mir-450
Literature search

4 open access papers mention ssc-mir-450c
(4 sentences)

        u       uuu     u              uaa 
5' ggcac aaacuau   ugcga guguuccuaauacg   u
   ||||| |||||||   ||||| ||||||||||||||   c
3' cugug uuugaug   acguu uacaaggguuaugu   u
        u       cuu     u              gaa 
Get sequence
Deep sequencing
4935 reads, 553 reads per million, 15 experiments
Confidence Annotation confidence: not enough data
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Genome context
Coordinates (Sscrofa10.2; GCA_000003025.4) Overlapping transcripts
chrUScaf3177: 4053-4133 [+]
Clustered miRNAs
< 10kb from ssc-mir-450c
ssc-mir-542chrUScaf3177: 3348-3427 [+]
ssc-mir-450cchrUScaf3177: 4053-4133 [+]
ssc-mir-450achrUScaf3177: 4173-4278 [+]
ssc-mir-450bchrUScaf3177: 4358-4437 [+]
Database links

Mature sequence ssc-miR-450c-5p

Accession MIMAT0015717
Previous IDsssc-miR-450c

14 - 


 - 35

Get sequence
Deep sequencing4840 reads, 15 experiments
Evidence experimental; Illumina [2]

Mature sequence ssc-miR-450c-3p

Accession MIMAT0015718
Previous IDsssc-miR-450c*

49 - 


 - 70

Get sequence
Deep sequencing95 reads, 10 experiments
Evidence experimental; cloned [1], Illumina [2]


PMID:20180025 "Cloning and characterization of microRNAs from porcine skeletal muscle and adipose tissue" Cho IS, Kim J, Seo HY, Lim DH, Hong JS, Park YH, Park DC, Hong KC, Whang KY, Lee YS Mol Biol Rep. 37:3567-3574(2010).
PMID:21312241 "MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing" Li G, Li Y, Li X, Ning X, Li M, Yang G J Cell Biochem. 112:1318-1328(2011).