Stem-loop sequence ssc-mir-338

Accession

MI0014773 (change log)

Description

Sus scrofa miR-338 stem-loop

Gene family

MIPF0000097; mir-338

Literature search

5 open access papers mention ssc-mir-338
(12 sentences)

Stem-loop

   cc      cc      u   -         -   ga  a 
5'   guccuc  caacaa auc cuggugcug agu  ug c
     ||||||  |||||| ||| ||||||||| |||  || a
3'   cgggag  guuguu uag gacuacgac uca  gc c
   ga      aa      u   u         c   ac  a 

Deep sequencing

16 reads, 0 reads per million, 4 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Sscrofa10.2; GCA_000003025.4): chr12: 1507084-1507162 [+]
• Overlapping transcripts:

  sense

  ENSSSCT00000026374 ; ssc-mir-338.1-201; exon 1

  ENSSSCT00000023391 ; AATK-201; intron 7

  ENSSSCT00000018660 ; AATK-202; intron 7

Database links

• EntrezGene:MIR338
• miRBase Tracker:MI0014773

Mature sequence ssc-miR-338

• Accession: MIMAT0015713
• Sequence: 48 - uccagcaucagugauuuuguug - 69
• Deep sequencing: 14 reads, 4 experiments
• Evidence: experimental; cloned [1], Illumina [2]

References

1. PMID:20180025 "Cloning and characterization of microRNAs from porcine skeletal muscle and adipose tissue" Cho IS, Kim J, Seo HY, Lim DH, Hong JS, Park YH, Park DC, Hong KC, Whang KY, Lee YS Mol Biol Rep. 37:3567-3574(2010).
2. PMID:24499489 "Exploration of microRNAs in porcine milk exosomes" Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL BMC Genomics. 15:100(2014).