Stem-loop sequence ssc-mir-22

AccessionMI0014770 (change log)
DescriptionSus scrofa miR-22 stem-loop
Gene family MIPF0000053; mir-22
Literature search

13 open access papers mention ssc-mir-22
(28 sentences)

Stem-loop 
   ---   cc               -     a      u  ccu 
5'    gag  gcaguaguucuucag uggca gcuuua gu   g
      |||  ||||||||||||||| ||||| |||||| ||   a
3'    cuc  cguugucaagaaguu accgu cgaaau cg   c
   cgu   -c               g     -      -  acc
Get sequence
Deep sequencing
6911 reads, 1.13e+03 reads per million, 15 experiments
Confidence Annotation confidence: high
Feedback: Do you believe this miRNA is real?
Database links

Mature sequence ssc-miR-22-5p

Accession MIMAT0015709
Sequence

11 -  

aguucuucaguggcaagcuuua

 - 32

Get sequence
Deep sequencing259 reads, 15 experiments
Evidence experimental; Illumina [1,3-4]

Mature sequence ssc-miR-22-3p

Accession MIMAT0015710
Sequence

49 -  

aagcugccaguugaagaacugu

 - 70

Get sequence
Deep sequencing6651 reads, 15 experiments
Evidence experimental; Illumina [1,3-4], cloned [2]

References

1
PMID:19917043 "MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing" Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B Anim Genet. 41:159-168(2010).
2
PMID:20180025 "Cloning and characterization of microRNAs from porcine skeletal muscle and adipose tissue" Cho IS, Kim J, Seo HY, Lim DH, Hong JS, Park YH, Park DC, Hong KC, Whang KY, Lee YS Mol Biol Rep. 37:3567-3574(2010).
3
PMID:21312241 "MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing" Li G, Li Y, Li X, Ning X, Li M, Yang G J Cell Biochem. 112:1318-1328(2011).
4
PMID:24499489 "Exploration of microRNAs in porcine milk exosomes" Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL BMC Genomics. 15:100(2014).