miRBase entry: nvi-mir-34

Stem-loop nvi-mir-34


Accession
MI0014743
Description
Nasonia vitripennis nvi-mir-34 precursor miRNA
Gene family
MIPF0000039; mir-34


Sequence

cggggaagcgaccggcguguUGGCAGUGUGGUUAGCUGGUUGuguagcuuauagaaagcacgaccgcuaucgacacugcaauuaugacggucgcgauuc
.......(((((((.((((...(((((((.(.((((.((((((((............)))))))))))).).)))))))...)))).))))))).....

Structure
cggggaa       g    uUG       G U    U        agcuu 
       gcgaccg cgug   GCAGUGU G UAGC GGUUGugu     a
       ||||||| ||||   ||||||| | |||| ||||||||      
       cgcuggc guau   cgucaca c aucg ccagcacg     u
--cuuag       a    uaa       g u    -        aaaga 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr4: 7973903-7974001 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from nvi-mir-34
Name Accession Chromosome Start End Strand Confidence




Database links

Mature nvi-miR-34

Accession MIMAT0015682
Description Nasonia vitripennis nvi-miR-34 mature miRNA
Sequence 21 - UGGCAGUGUGGUUAGCUGGUUG - 42
Evidence not_experimental

References

  1. PubMed ID: 20075255
    Functional and evolutionary insights from the genomes of three parasitoid Nasonia species
    "Werren JH, Richards S, Desjardins CA, Niehuis O, Gadau J, Colbourne JK, Werren JH, Richards S, Desjardins CA, Niehuis O, Gadau J, Colbourne JK, Beukeboom LW, Desplan C, Elsik CG, Grimmelikhuijzen CJ, Kitts P, Lynch JA, Murphy T, Oliveira DC, Smith CD, van"
    "Science (2010) 327:343-348