miRBase entry: nvi-mir-125

Stem-loop nvi-mir-125


Accession
MI0014740
Description
Nasonia vitripennis nvi-mir-125 precursor miRNA
Gene family
MIPF0000033; mir-10


Sequence

auaaagccugccgccgcgucgccgguUCCCUGAGACCCUAACUUGUGAcgucgcguacgauaucucacaggcuagauucucugguauuggcgaugagugcugccuuuuga
.........((.(((.((((((((((..((.((((..(((.(((((((.((((....))))...))))))).)))..)))).)).)))))))))).).)).)).......

Structure
auaaagccu  c  - g          UC  U    CC   A       --c    c 
         gc gc c cgucgccggu  CC GAGA  CUA CUUGUGA   gucg g
         || || | ||||||||||  || ||||  ||| |||||||   ||||  
         cg cg g guagcgguua  gg cucu  gau ggacacu   uagc u
--aguuuuc  u  u a          -u  u    ua   c       cua    a 


Annotation confidence Not enough data
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Genome context
GL340819.1: 32632-32741 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from nvi-mir-125
Name Accession Chromosome Start End Strand Confidence




Database links

Mature nvi-miR-125

Accession MIMAT0015679
Description Nasonia vitripennis nvi-miR-125 mature miRNA
Sequence 27 - UCCCUGAGACCCUAACUUGUGA - 48
Evidence experimental
454 [1]

References

  1. PubMed ID: 20075255
    Functional and evolutionary insights from the genomes of three parasitoid Nasonia species
    "Werren JH, Richards S, Desjardins CA, Niehuis O, Gadau J, Colbourne JK, Werren JH, Richards S, Desjardins CA, Niehuis O, Gadau J, Colbourne JK, Beukeboom LW, Desplan C, Elsik CG, Grimmelikhuijzen CJ, Kitts P, Lynch JA, Murphy T, Oliveira DC, Smith CD, van"
    "Science (2010) 327:343-348