miRBase entry: nvi-let-7

Stem-loop nvi-let-7


Accession
MI0014739
Description
Nasonia vitripennis nvi-let-7 precursor miRNA
Gene family
MIPF0000002; let-7


Sequence

gcgacgccugggUGAGGUAGUAGGUUGUAUAGUggggaaugaaaauucgucauuauggaauccacuguacaacuugcuaacuuucccgguugucggcgc
.(((((.(((((.(((.(((((((((((((((((((((((....))))............))))))))))))))))))).))).))))).)))))....

Structure
---g     c     U   G                   ------------    g 
    cgacg cuggg GAG UAGUAGGUUGUAUAGUggg            gaau a
    ||||| ||||| ||| |||||||||||||||||||            ||||  
    gcugu ggccc uuc aucguucaacaugucaccu            cuua a
cgcg     u     u   a                   aagguauuacug    a 


Annotation confidence Not enough data
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Genome context
GL340819.1: 31069-31167 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from nvi-let-7
Name Accession Chromosome Start End Strand Confidence




Database links

Mature nvi-let-7

Accession MIMAT0015678
Description Nasonia vitripennis nvi-let-7 mature miRNA
Sequence 13 - UGAGGUAGUAGGUUGUAUAGU - 33
Evidence experimental
454 [1]

References

  1. PubMed ID: 20075255
    Functional and evolutionary insights from the genomes of three parasitoid Nasonia species
    "Werren JH, Richards S, Desjardins CA, Niehuis O, Gadau J, Colbourne JK, Werren JH, Richards S, Desjardins CA, Niehuis O, Gadau J, Colbourne JK, Beukeboom LW, Desplan C, Elsik CG, Grimmelikhuijzen CJ, Kitts P, Lynch JA, Murphy T, Oliveira DC, Smith CD, van"
    "Science (2010) 327:343-348