miRBase entry: nvi-mir-100

Stem-loop nvi-mir-100


Accession
MI0014738
Description
Nasonia vitripennis nvi-mir-100 precursor miRNA
Gene family
MIPF0000033; mir-10


Sequence

cagcuacuugaugacacuAACCCGUAGAUCCGAACUUGUGggcuuuuuuauaugcauaccgcaagcuccuaucuaccgguacauguagucaggccggcgu
..(((.((((((.(((...(((.((((((..((.(((((((((..........))...))))))).))..)))))).)))...))).))))))..)))..

Structure
ca   -a      g   cuA   C      CC  A       ---  uuuu 
  gcu  cuugau aca   ACC GUAGAU  GA CUUGUGg   gc    u
  |||  |||||| |||   ||| ||||||  || |||||||   ||     
  cgg  ggacug ugu   ugg caucua  cu gaacgcc   cg    u
ug   cc      a   aca   c      uc  c       aua  uaua 


Annotation confidence Not enough data
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Genome context
GL340819.1: 29839-29938 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from nvi-mir-100
Name Accession Chromosome Start End Strand Confidence




Database links

Mature nvi-miR-100

Accession MIMAT0015677
Description Nasonia vitripennis nvi-miR-100 mature miRNA
Sequence 19 - AACCCGUAGAUCCGAACUUGUG - 40
Evidence experimental
454 [1]

References

  1. PubMed ID: 20075255
    Functional and evolutionary insights from the genomes of three parasitoid Nasonia species
    "Werren JH, Richards S, Desjardins CA, Niehuis O, Gadau J, Colbourne JK, Werren JH, Richards S, Desjardins CA, Niehuis O, Gadau J, Colbourne JK, Beukeboom LW, Desplan C, Elsik CG, Grimmelikhuijzen CJ, Kitts P, Lynch JA, Murphy T, Oliveira DC, Smith CD, van"
    "Science (2010) 327:343-348