miRBase entry: nvi-mir-2c

Stem-loop nvi-mir-2c


Accession
MI0014724
Description
Nasonia vitripennis nvi-mir-2c precursor miRNA
Gene family
MIPF0000049; mir-2


Sequence

ggagacaagagagcgaguggcaugcuuuuaccaucaaagcugguuugucauagggcuucgacUAUCACAGCCAGCUUUGAUGAGCaaaauuguguccggcau
(((.(((((((((((.(...).)))))))..((((((((((((((.((.((((........)))).)))))))))))))))).......)))).))).....

Structure
-----   g    gagagcgaguggcaugcuuuuac              u  c    ggc 
     gga acaa                       caucaaagcugguu gu auag   u
     ||| ||||                       |||||||||||||| || ||||    
     ccu uguu                       GUAGUUUCGACCGA CA UAUc   u
uacgg   g    ----------------aaaaCGA              -  C    agc 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr1: 8079186-8079287 [+]
Clustered miRNAs
5 other miRNAs are < 10 kb from nvi-mir-2c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature nvi-miR-2c

Accession MIMAT0015663
Description Nasonia vitripennis nvi-miR-2c mature miRNA
Sequence 63 - UAUCACAGCCAGCUUUGAUGAGC - 85
Evidence experimental
454 [1]

References

  1. PubMed ID: 20075255
    Functional and evolutionary insights from the genomes of three parasitoid Nasonia species
    "Werren JH, Richards S, Desjardins CA, Niehuis O, Gadau J, Colbourne JK, Werren JH, Richards S, Desjardins CA, Niehuis O, Gadau J, Colbourne JK, Beukeboom LW, Desplan C, Elsik CG, Grimmelikhuijzen CJ, Kitts P, Lynch JA, Murphy T, Oliveira DC, Smith CD, van"
    "Science (2010) 327:343-348