miRBase entry: nvi-mir-71

Stem-loop nvi-mir-71


Accession
MI0014723
Description
Nasonia vitripennis nvi-mir-71 precursor miRNA
Gene family
MIPF0000278; mir-71


Sequence

gaaaaucaauuggcgagauuccgcuUGAAAGACAUGGGUAGUGAgaugcuuaccucggauucgcgucucacuaccuugucuuucaugcggcgcucgcagcaa
............(((((.(.((((.(((((((((.((((((((((((((...(....)....))))))))))))))))))))))).)))).)))))).....

Structure
gaaaaucaauug     a u    u         U              -uua c 
            gcgag u ccgc UGAAAGACA GGGUAGUGAgaugc    c u
            ||||| | |||| ||||||||| ||||||||||||||    |  
            cgcuc g ggcg acuuucugu uccaucacucugcg    g c
-------aacga     - c    u         -              cuua g 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr1: 8079015-8079116 [+]
Clustered miRNAs
5 other miRNAs are < 10 kb from nvi-mir-71
Name Accession Chromosome Start End Strand Confidence




Database links

Mature nvi-miR-71

Accession MIMAT0015662
Description Nasonia vitripennis nvi-miR-71 mature miRNA
Sequence 26 - UGAAAGACAUGGGUAGUGA - 44
Evidence experimental
454 [1]

References

  1. PubMed ID: 20075255
    Functional and evolutionary insights from the genomes of three parasitoid Nasonia species
    "Werren JH, Richards S, Desjardins CA, Niehuis O, Gadau J, Colbourne JK, Werren JH, Richards S, Desjardins CA, Niehuis O, Gadau J, Colbourne JK, Beukeboom LW, Desplan C, Elsik CG, Grimmelikhuijzen CJ, Kitts P, Lynch JA, Murphy T, Oliveira DC, Smith CD, van"
    "Science (2010) 327:343-348