miRBase entry: ath-MIR774b

Stem-loop ath-MIR774b


Accession
MI0014668
Description
Arabidopsis thaliana ath-MIR774b precursor miRNA
Gene family
MIPF0001101; MIR774

Literature search
2 open access papers mention ath-MIR774b
(7 sentences)

Sequence

gaguguugauuauauggauucauuUGAGAUGAAGAUAUGGGUGAUgaucaaugcuuacgauuuuggucaauuuauguuagcaauuuaauucuuuuuCAUCCAUAUUUUCAUCUCGAAuuuaaucuuuaaaaaagcguuu
....(((........(((((.((((((((((((((((((((((((((((((...........)))))))..........................)))))))))))))))))))))))..))))).......)))....

Structure
gagu   gauuauau     -c                       --------------------------       ugcu 
    guu        ggauu  auuUGAGAUGAAGAUAUGGGUGA                          Ugaucaa    u
    |||        |||||  |||||||||||||||||||||||                          |||||||    a
    cga        ucuaa  uAAGCUCUACUUUUAUACCUACu                          acugguu    c
uuug   -aaaaauu     uu                       uuuucuuaauuuaacgauuguauuua       uuag 


Annotation confidence Not enough data
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Genome context
chr1: 22150128-22150266 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from ath-MIR774b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ath-miR774b-5p

Accession MIMAT0017739
Description Arabidopsis thaliana ath-miR774b-5p mature miRNA
Sequence 25 - UGAGAUGAAGAUAUGGGUGAU - 45
Evidence experimental
Illumina [1]

Mature ath-miR774b-3p

Accession MIMAT0017740
Description Arabidopsis thaliana ath-miR774b-3p mature miRNA
Sequence 97 - CAUCCAUAUUUUCAUCUCGAA - 117
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20407027
    MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
    "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
    "Plant Cell (2010) 22:1074-1089