miRBase entry: aly-MIR3440

Stem-loop aly-MIR3440


Accession
MI0014656
Description
Arabidopsis lyrata aly-MIR3440 precursor miRNA
Gene family
MIPF0001127; MIR3440


Sequence

11 reads, 384 reads per million, 1 experiments
guuugauauuaauacuaacaucaaaaguagauugcuugccauuugguuaggaauuggucugcggcauuuuccacaagugUGGUUUCCCUGGCCAAUCCACUuguaauguguauuuuguaaauaacgcaaaaugugcauuagaagUGGAUUGGUCAAGAGAACCGCAcuugugcaaaauaccgcaguccaauuucugacaaaaugacaagcaauccauuuuggauggcuugucuguaucgagc
(((((((((..(((....((((.(((((.(((((((((.(((((.((((((((((((.((((((.(((((.((((((((((((((.(.((((((((((((((.(((((((((((((((.......))))))))))))))).)))))))))))))).).)))))))))))))).))))).)))))).)))))))))))).))))).))))))))).))))).))))...)))..)))))))))

Structure
         ua   cuaa    a     a         c     g            u      c     c              C C              g               aa 
guuugauau  aua    cauc aaagu gauugcuug cauuu guuaggaauugg cugcgg auuuu cacaagugUGGUUU C UGGCCAAUCCACUu uaauguguauuuugu  a
|||||||||  |||    |||| ||||| ||||||||| ||||| |||||||||||| |||||| ||||| |||||||||||||| | |||||||||||||| |||||||||||||||  u
cgagcuaug  ugu    guag uuuua cuaacgaac guaaa cagucuuuaacc gacgcc uaaaa guguucACGCCAAG G ACUGGUUAGGUgaa auuacguguaaaacg  a
         uc   -ucg    g     c         a     a            u      a     c              A A              g               ca 


Annotation confidence Not enough data
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Genome context
GL348715.1: 7758213-7758454 [+]

Database links

Mature aly-miR3440-5p

Accession MIMAT0017711
Description Arabidopsis lyrata aly-miR3440-5p mature miRNA
Sequence 80 - UGGUUUCCCUGGCCAAUCCACU - 101
Evidence experimental
Illumina [1], SOLiD [2]

Mature aly-miR3440-3p

Accession MIMAT0017712
Description Arabidopsis lyrata aly-miR3440-3p mature miRNA
Sequence 145 - UGGAUUGGUCAAGAGAACCGCA - 166
Evidence experimental
Illumina [1], SOLiD [2]

References

  1. PubMed ID: 20407027
    MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
    "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
    "Plant Cell (2010) 22:1074-1089

  2. PubMed ID: 20407023
    Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
    "Ma Z, Coruh C, Axtell MJ"
    "Plant Cell (2010) 22:1090-1103