Stem-loop aly-MIR839

Accession

MI0014613

Description

Arabidopsis lyrata aly-MIR839 precursor miRNA

Gene family

MIPF0001143; MIR839

Sequence

14 reads, 488 reads per million, 1 experiments

caacuuucguuacaacuaucauucgagugagcacaaagaguagcauaagcucuccuuugacaucuuCACCAACCUCUCAUCGUUCCCuucucuguaauaacgucguuuugcaaaacugcaaugguccugagccgauaagccucuaaugaaauuauagacucaucggcucaggaccauugcgguugugcaaaacgguguuauugccgagaaggGAACGCAUGAGAGGUUGGUGAAaacgucaaagggcucuuaugcuacucuuuuuuuuucucauaugagugagugauaaccauaguug
(((((...((((..((..(((((((.(((((...(((((((((((((((..(.((((((((...((((((((((((((((((((((((((((.(((((((((((((((((((.(((((((((((((((((((((((.((.((.((((...)))).)).)).))))))))))))))))))))))).))))))))))))))))))).)))))))))))).))))))))))))))))...)))))))))..)))))))))))))))......))))).)))))))))..))))...)))))

Structure

     uuc    ca  ua       a     ---cac               cu u        auc                -            u                   a                       a  c  c    g 
caacu   guua  ac  ucauucg gugag      aaagaguagcauaag  c ccuuugac   uuCACCAACCUCUCAU CGUUCCCuucuc guaauaacgucguuuugca aacugcaaugguccugagccgau ag cu uaau  
|||||   ||||  ||  ||||||| |||||      |||||||||||||||  | ||||||||   |||||||||||||||| |||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| || || |||| a
guuga   caau  ug  agugagu uacuc      uuucucaucguauuc  g ggaaacug   AAGUGGUUGGAGAGUA GCAAGggaagag cguuauuguggcaaaacgu uuggcguuaccaggacucggcua uc ga auua  
     uac    ag  --       a     uuuuuu               uc -        caa                C            c                   g                       c  a  u    a 

Annotation confidence Not enough data

Genome context

GL348714.1: 12500788-12501085 [-]

Mature aly-miR839-5p

• Accession: MIMAT0017623
• Description: Arabidopsis lyrata aly-miR839-5p mature miRNA
• Sequence: 67 - CACCAACCUCUCAUCGUUCCC - 87
• Evidence: experimental ; Illumina [1], SOLiD [2]

Mature aly-miR839-3p

• Accession: MIMAT0017624
• Description: Arabidopsis lyrata aly-miR839-3p mature miRNA
• Sequence: 213 - GAACGCAUGAGAGGUUGGUGAA - 234
• Evidence: experimental ; Illumina [1], SOLiD [2]

References

1. PubMed ID: 20407027
   MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
   "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
   "Plant Cell (2010) 22:1074-1089


2. PubMed ID: 20407023
   Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
   "Ma Z, Coruh C, Axtell MJ"
   "Plant Cell (2010) 22:1090-1103