Stem-loop aly-MIR399f

Accession

MI0014593

Description

Arabidopsis lyrata aly-MIR399f precursor miRNA

Gene family

MIPF0000015; MIR399

Sequence

augaaagauacauagagaaggugcaaauacauuacaGGGCAAGAUCACCAUUGGCAGAaaucuauuacuucauucuugcauaauaugcauuaauguuuguggugagcucucUGCCAAAGGAGAUUUGCCCUGuaauucucuugcgccaauguuuuagauaucuucau
(((((.((((..(((((..(((((((....(((((((((((.((((.((.((((((((..((.(((((..((((..(((((...)))))..))))...)))))))....)))))))).)).)))))))))))))))....)))))))....)))))..)))))))))

Structure

     a    ca     --aa       auac           A    A  A        --aa  u     -uu    cu     a 
augaa gaua  uagag    ggugcaa    auuacaGGGCA GAUC CC UUGGCAGA    uc auuac   cauu  ugcau  
||||| ||||  |||||    |||||||    ||||||||||| |||| || ||||||||    || |||||   ||||  ||||| a
uacuu cuau  auuuu    ccgcguu    uaauGUCCCGU UUAG GG AACCGUcu    ag uggug   guaa  acgua  
     -    ag     guaa       cucu           -    A  A        cucg  -     uuu    uu     u 

Annotation confidence Not enough data

Genome context

GL348716.1: 16219612-16219778 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from aly-MIR399f

Mature aly-miR399f-5p

• Accession: MIMAT0017581
• Description: Arabidopsis lyrata aly-miR399f-5p mature miRNA
• Sequence: 37 - GGGCAAGAUCACCAUUGGCAGA - 58
• Evidence: experimental ; Illumina [1], SOLiD [2]

Mature aly-miR399f-3p

• Accession: MIMAT0017582
• Description: Arabidopsis lyrata aly-miR399f-3p mature miRNA
• Sequence: 112 - UGCCAAAGGAGAUUUGCCCUG - 132
• Evidence: experimental ; Illumina [1], SOLiD [2]

References

1. PubMed ID: 20407027
   MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
   "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
   "Plant Cell (2010) 22:1074-1089


2. PubMed ID: 20407023
   Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
   "Ma Z, Coruh C, Axtell MJ"
   "Plant Cell (2010) 22:1090-1103