Stem-loop aly-MIR397b

Accession

MI0014584

Description

Arabidopsis lyrata aly-MIR397b precursor miRNA

Gene family

MIPF0000120; MIR397

Sequence

1 reads, 35 reads per million, 1 experiments

ccuggguuugaauaaacaUCAUUGAGUGCAGCGUUGAUGuaaguuuacuuauuuuauuccauuguugaaugaauuaaaaugauacagaauacaUCAGCGUUGCAUUCAAUUAUGuuuuucuaauuuucagg
((((((...(((.((((((.(((((((((((((((((((((.......((((((((...((((....))))...)))))))).......))))))))))))))))))))).))))))))).....))))))

Structure

      --uuu   u      C                     aguuuac        uuc    g 
ccuggg     gaa aaacaU AUUGAGUGCAGCGUUGAUGua       uuauuuua   cauu u
||||||     ||| |||||| |||||||||||||||||||||       ||||||||   ||||  
ggacuu     cuu uuuGUA UAACUUACGUUGCGACUacau       aguaaaau   guaa u
      uuaau   -      U                     aagacau        uaa    g 

Annotation confidence Not enough data

Genome context

GL348719.1: 14978335-14978465 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from aly-MIR397b

Mature aly-miR397b-5p

• Accession: MIMAT0017563
• Description: Arabidopsis lyrata aly-miR397b-5p mature miRNA
• Sequence: 19 - UCAUUGAGUGCAGCGUUGAUG - 39
• Evidence: experimental ; Illumina [1], SOLiD [2]

Mature aly-miR397b-3p

• Accession: MIMAT0017564
• Description: Arabidopsis lyrata aly-miR397b-3p mature miRNA
• Sequence: 94 - UCAGCGUUGCAUUCAAUUAUG - 114
• Evidence: experimental ; Illumina [1], SOLiD [2]

References

1. PubMed ID: 20407027
   MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
   "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
   "Plant Cell (2010) 22:1074-1089


2. PubMed ID: 20407023
   Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
   "Ma Z, Coruh C, Axtell MJ"
   "Plant Cell (2010) 22:1090-1103