miRBase entry: aly-MIR394a

Stem-loop aly-MIR394a


Accession
MI0014574
Description
Arabidopsis lyrata aly-MIR394a precursor miRNA
Gene family
MIPF0000100; MIR394


Sequence

21 reads, 732 reads per million, 1 experiments
uagauuggaucuuuaaacuuuuguuccuuuucaugaggguuugacaaagaguuucuuacagacaucuUUGGCAUUCUGUCCACCUCCuccuguacauguguguauauauauguguuuuguguggaagaaggAGGUGGGUAUACUGCCAAUAgagaucuguuaggguuucuucguaaaacccucuugaucuauauacaacuuuaucaaugucuugaaucug
((((((((((..........((((......(((.((((((((.((.(((((.((((.(((((..(((((((((...((((((((((((.((..(((((((((....)))))))))..........)).))))))))))))...)))))).)))..))))).)))).))))).)).)))))))).))).......))))..........))))..))))))

Structure
      --    cuuuaaacuu    -uccuuu   u        g  a     u    u     ca   -      UUC            c  --------gu         u 
uagauu  ggau          uugu       uca gaggguuu ac aagag uucu acaga  ucu UUGGCA   UGUCCACCUCCu cu          acaugugug a
||||||  ||||          ||||       ||| |||||||| || ||||| |||| |||||  ||| ||||||   |||||||||||| ||          |||||||||  
gucuaa  ucug          aaca       agu cucccaaa ug uucuu ggga ugucu  agA AACCGU   AUGGGUGGAgga ga          uguguauau u
      gu    uaacuauuuc    uauaucu   u        a  c     u    u     ag   U      CAU            a  agguguguuu         a 


Annotation confidence Not enough data
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Genome context
GL348713.1: 8699173-8699392 [+]

Database links

Mature aly-miR394a-5p

Accession MIMAT0017543
Description Arabidopsis lyrata aly-miR394a-5p mature miRNA
Sequence 68 - UUGGCAUUCUGUCCACCUCC - 87
Evidence experimental
Illumina [1], SOLiD [2]
Database links

Mature aly-miR394a-3p

Accession MIMAT0017544
Description Arabidopsis lyrata aly-miR394a-3p mature miRNA
Sequence 132 - AGGUGGGUAUACUGCCAAUA - 151
Evidence experimental
Illumina [1], SOLiD [2]

References

  1. PubMed ID: 20407027
    MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
    "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
    "Plant Cell (2010) 22:1074-1089

  2. PubMed ID: 20407023
    Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
    "Ma Z, Coruh C, Axtell MJ"
    "Plant Cell (2010) 22:1090-1103