miRBase entry: aly-MIR172e

Stem-loop aly-MIR172e


Accession
MI0014567
Description
Arabidopsis lyrata aly-MIR172e precursor miRNA
Gene family
MIPF0000035; MIR172


Sequence

75 reads, 2615 reads per million, 1 experiments
gccaguagucgcagauGCAGCACCAUUAAGAUUCACaagagaugugguucccuuuguuuuugccucucgauccgaagaaaaggguuccuuucgaguggGAAUCUUGAUGAUGCUGCAUcagcaaauacauggc
(((((((...((.(((((((((.(((((((((((.((...((...((..((((((.((((((..........))))))))))))..))..))...)).))))))))))).))))))))).))...))).))))

Structure
    -   guc  a         C           A  aga  ugu  uu      g      ccuc 
gcca gua   gc gauGCAGCA CAUUAAGAUUC Ca   ga   gg  cccuuu uuuuug    u
|||| |||   || ||||||||| ||||||||||| ||   ||   ||  |||||| ||||||     
cggu cau   cg cUACGUCGU GUAGUUCUAAG gu   cu   cc  gggaaa agaagc    c
    a   aaa  a         A           g  gag  -uu  uu      -      cuag 


Annotation confidence Not enough data
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Genome context
GL348720.1: 19150533-19150665 [+]

Database links

Mature aly-miR172e-5p

Accession MIMAT0017529
Description Arabidopsis lyrata aly-miR172e-5p mature miRNA
Sequence 17 - GCAGCACCAUUAAGAUUCAC - 36
Evidence experimental
Illumina [1], SOLiD [2]

Mature aly-miR172e-3p

Accession MIMAT0017530
Description Arabidopsis lyrata aly-miR172e-3p mature miRNA
Sequence 99 - GAAUCUUGAUGAUGCUGCAU - 118
Evidence experimental
Illumina [1], SOLiD [2]
Database links

References

  1. PubMed ID: 20407027
    MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
    "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
    "Plant Cell (2010) 22:1074-1089

  2. PubMed ID: 20407023
    Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
    "Ma Z, Coruh C, Axtell MJ"
    "Plant Cell (2010) 22:1090-1103