miRBase entry: aly-MIR171a

Stem-loop aly-MIR171a


Accession
MI0014560
Description
Arabidopsis lyrata aly-MIR171a precursor miRNA
Gene family
MIPF0000030; MIR171_1


Sequence

64 reads, 2232 reads per million, 1 experiments
ucguuuuuuauauuguuuuccuuugaucuaucacuuaagcacgagagagucccuuugaUAUUGGCCUGGUUCACUCAGAucuucccugaccacacucacgucguacauaugcauucucucuagauuaucUGAUUGAGCCGCGCCAAUAUCucaguacucucucgucucuauuuuggacuuugugaucuuguaaaucga
(((...((((((..(((.......(.((((.......((.((((((((((..((..(((((((((.(((((((.((((((..((...(((.........)))(((....)))..........))..)))))).))))))).)))))))))..)).))))))))))))......))))).....)))..)))))).)))

Structure
   uuu      uu   uuccuuu a    ucacuua  c          cc  uu         C       C      cu  -----------------ccu   cac 
ucg   uuuaua  guu       g ucua       ag acgagagagu  cu  gaUAUUGGC UGGUUCA UCAGAu  uc                    gac   a
|||   ||||||  |||       | ||||       || ||||||||||  ||  ||||||||| ||||||| ||||||  ||                    |||   c
agc   aaaugu  uag       c aggu       uc ugcucucuca  ga  CUAUAACCG GCCGAGU AGUcua  ag                    cug   u
   --u      uc   --uguuu -    -uuuauc  -          -u  cu         C       U      uu  aucucucuuacguauacaug   cac 


Annotation confidence Not enough data
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Genome context
GL348717.1: 15611064-15611261 [+]

Database links

Mature aly-miR171a-5p

Accession MIMAT0017515
Description Arabidopsis lyrata aly-miR171a-5p mature miRNA
Sequence 59 - UAUUGGCCUGGUUCACUCAGA - 79
Evidence experimental
Illumina [1], SOLiD [2]

Mature aly-miR171a-3p

Accession MIMAT0017516
Description Arabidopsis lyrata aly-miR171a-3p mature miRNA
Sequence 130 - UGAUUGAGCCGCGCCAAUAUC - 150
Evidence experimental
Illumina [1], SOLiD [2]
Database links

References

  1. PubMed ID: 20407027
    MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
    "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
    "Plant Cell (2010) 22:1074-1089

  2. PubMed ID: 20407023
    Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
    "Ma Z, Coruh C, Axtell MJ"
    "Plant Cell (2010) 22:1090-1103