miRBase entry: aly-MIR170

Stem-loop aly-MIR170


Accession
MI0014559
Description
Arabidopsis lyrata aly-MIR170 precursor miRNA
Gene family
MIPF0000030; MIR171_1


Sequence

3 reads, 105 reads per million, 1 experiments
cauucucucucuucgauucuuguuucucuugcaaaacagauacccucugucucugaguccgagagagucccucugaUAUUGGCCUGGUUCACUCAGAuucuccuaacuaacucaucUGAUUGAGCCGUGUCAAUAUCucaguccucucucgucgcuucucucauacuuuagagauuguuuuguuuuguacacacgaguuguuuguugauaug
.....((......((((((.(((......(((((((((((((..(((((....((((..((((((((...((..(((((((((.(((((((.((((((...............)))))).))))))).)))))))))..))..))))))))........)))).....)))))..)).))))))))))).))).))))))......))....

Structure
cauuc  ucucuu      u   uucucu           -  cc     -ucuc    ------uc        ucc  cu         C       C      ucuccu 
     uc      cgauuc ugu      ugcaaaacaga ua  cucug     ugag        cgagagag   cu  gaUAUUGGC UGGUUCA UCAGAu      a
     ||      |||||| |||      ||||||||||| ||  |||||     ||||        ||||||||   ||  ||||||||| ||||||| ||||||      a
     ag      guugag aca      auguuuuguuu gu  gagau     acuc        gcucucuc   ga  CUAUAACUG GCCGAGU AGUcua      c
-guau  uuguuu      c   -----c           u  ua     uucau    ucuucgcu        -cu  cu         U       U      cucaau 


Annotation confidence Not enough data
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Genome context
GL348720.1: 22899701-22899912 [+]

Database links

Mature aly-miR170-5p

Accession MIMAT0017513
Description Arabidopsis lyrata aly-miR170-5p mature miRNA
Sequence 77 - UAUUGGCCUGGUUCACUCAGA - 97
Evidence experimental
Illumina [1], SOLiD [2]

Mature aly-miR170-3p

Accession MIMAT0017514
Description Arabidopsis lyrata aly-miR170-3p mature miRNA
Sequence 117 - UGAUUGAGCCGUGUCAAUAUC - 137
Evidence experimental
Illumina [1], SOLiD [2]

References

  1. PubMed ID: 20407027
    MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
    "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
    "Plant Cell (2010) 22:1074-1089

  2. PubMed ID: 20407023
    Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
    "Ma Z, Coruh C, Axtell MJ"
    "Plant Cell (2010) 22:1090-1103