miRBase entry: aly-MIR169d

Stem-loop aly-MIR169d


Accession
MI0014548
Description
Arabidopsis lyrata aly-MIR169d precursor miRNA
Gene family
MIPF0000037; MIR169_2


Sequence

32 reads, 1116 reads per million, 1 experiments
guaucuuugagucuuacauggaaaaaauagagaaugagauUGAGCCAAGGAUGACUUGCCGauuuuuaucaacaaaucuuaacugauuauggugcccgGCAAGUUGACCUUGGCUCUGUuuccuucucuucuuuucgaugucaaacucuagauau
((((((..((((...((((.(((((...((((((.(((((.(((((((((..(((((((((.....(((((...((((......)))).)))))..)))))))))..))))))))).))))).))))))..))))).))))...)))).))))))

Structure
      uu    cuu    g     aau      u     U         AU         auuuu     aca    uu 
guaucu  gagu   acau gaaaa   agagaa gagau GAGCCAAGG  GACUUGCCG     uauca   aauc  a
||||||  ||||   |||| |||||   |||||| ||||| |||||||||  |||||||||     |||||   ||||   
uauaga  cuca   ugua cuuuu   ucucuu cuuUG CUCGGUUCC  UUGAACGgc     guggu   uuag  a
      -u    aac    g     -cu      c     U         AG         ---cc     --a    uc 


Annotation confidence Not enough data
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Genome context
GL348713.1: 28725944-28726098 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from aly-MIR169d
Name Accession Chromosome Start End Strand Confidence




Database links

Mature aly-miR169d-5p

Accession MIMAT0017491
Description Arabidopsis lyrata aly-miR169d-5p mature miRNA
Sequence 41 - UGAGCCAAGGAUGACUUGCCG - 61
Evidence experimental
Illumina [1], SOLiD [2]
Database links

Mature aly-miR169d-3p

Accession MIMAT0017492
Description Arabidopsis lyrata aly-miR169d-3p mature miRNA
Sequence 99 - GCAAGUUGACCUUGGCUCUGU - 119
Evidence experimental
Illumina [1], SOLiD [2]
Database links

References

  1. PubMed ID: 20407027
    MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
    "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
    "Plant Cell (2010) 22:1074-1089

  2. PubMed ID: 20407023
    Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
    "Ma Z, Coruh C, Axtell MJ"
    "Plant Cell (2010) 22:1090-1103