miRBase entry: aly-MIR166d

Stem-loop aly-MIR166d


Accession
MI0014535
Description
Arabidopsis lyrata aly-MIR166d precursor miRNA
Gene family
MIPF0000004; MIR166


Sequence

114 reads, 3975 reads per million, 1 experiments
gguugagaGGAAUGUUGUCUGGCUCGAGGucaugaagaagaucauuagauugauucaucuuaaagaaugaaaacccuaaaugauucUCGGACCAGGCUUCAUUCCCCccaacc
(((((.(.((((((..((((((.((((((((((..((....(((((((((......)))).....))))).....))..)))).)))))).))))))..)))))).).)))))

Structure
     a a      UU      C      -    ga  -aaga     -----    ug 
gguug g GGAAUG  GUCUGG UCGAGG ucau  ag     ucauu     agau  a
||||| | ||||||  |||||| |||||| ||||  ||     |||||     ||||   
ccaac C CCUUAC  CGGACC GGCUcu agua  uc     aguaa     ucua  u
     c C      UU      A      u    aa  ccaaa     gaaau    cu 


Annotation confidence Not enough data
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Genome context
GL348718.1: 3632178-3632290 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from aly-MIR166d
Name Accession Chromosome Start End Strand Confidence




Database links

Mature aly-miR166d-5p

Accession MIMAT0017465
Description Arabidopsis lyrata aly-miR166d-5p mature miRNA
Sequence 9 - GGAAUGUUGUCUGGCUCGAGG - 29
Evidence experimental
Illumina [1], SOLiD [2]

Mature aly-miR166d-3p

Accession MIMAT0017466
Description Arabidopsis lyrata aly-miR166d-3p mature miRNA
Sequence 87 - UCGGACCAGGCUUCAUUCCCC - 107
Evidence experimental
Illumina [1], SOLiD [2]
Database links

References

  1. PubMed ID: 20407027
    MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
    "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
    "Plant Cell (2010) 22:1074-1089

  2. PubMed ID: 20407023
    Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
    "Ma Z, Coruh C, Axtell MJ"
    "Plant Cell (2010) 22:1090-1103