Stem-loop aly-MIR165b

Accession

MI0014531

Description

Arabidopsis lyrata aly-MIR165b precursor miRNA

Gene family

MIPF0000004; MIR166

Sequence

gugaagaggccauuuccguugugggGAAUGUUGUUUGGAUCGAGGauaucauaaaggcauacacaugcauuuauauguuaugaugcauuauaugauuguguaauguacuuauguacauauauauagaugguaaugguaucgUCGGACCAGGCUUCAUCCCCcucaacauguuaagugccuucaaucac
((((.(((((.((((..((((.((((.(((..((((((.((((.((((((((.......(((.(((..((.((((((((((((((((((((((....)))))))))).))))).))))))).))..)))))))))))))).)))).))))))..))).)))).)))).....)))))))))...))))

Structure

    --a     c    ---cc    u    A   UU      A    G        aaaggca   a   gc  u       -     -          g 
guga   gaggc auuu     guug gggG AUG  GUUUGG UCGA Gauaucau       uac cau  au uauaugu uauga ugcauuauau a
||||   ||||| ||||     |||| |||| |||  |||||| |||| ||||||||       ||| |||  || ||||||| ||||| ||||||||||  
cacu   uuccg ugaa     caac cCCC UAC  CGGACC GGCU cuauggua       aug gua  ua auauaca guauu auguaaugug u
    aac     -    uugua    u    C   UU      A    g        -------   -   ga  u       u     c          u 

Annotation confidence Not enough data

Genome context

GL348718.1: 24606419-24606606 [+]

Mature aly-miR165b-5p

• Accession: MIMAT0017457
• Description: Arabidopsis lyrata aly-miR165b-5p mature miRNA
• Sequence: 26 - GAAUGUUGUUUGGAUCGAGG - 45
• Evidence: experimental ; Illumina [1], SOLiD [2]

Mature aly-miR165b-3p

• Accession: MIMAT0017458
• Description: Arabidopsis lyrata aly-miR165b-3p mature miRNA
• Sequence: 142 - UCGGACCAGGCUUCAUCCCC - 161
• Evidence: experimental ; Illumina [1], SOLiD [2]

References

1. PubMed ID: 20407027
   MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
   "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
   "Plant Cell (2010) 22:1074-1089


2. PubMed ID: 20407023
   Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
   "Ma Z, Coruh C, Axtell MJ"
   "Plant Cell (2010) 22:1090-1103