Stem-loop aly-MIR156f

Accession

MI0014507

Description

Arabidopsis lyrata aly-MIR156f precursor miRNA

Gene family

MIPF0000008; MIR156

Sequence

150 reads, 5230 reads per million, 1 experiments

guaugugauauuaagagguauauaugaaucauaaauauggaugguuugauugaugaguaauugauggUGACAGAAGAGAGUGAGCACacaugguggcuuucuugcauauuugaugguuucaugcuugaagcuauguguGCUCACUCUCUAUCUGUCACCcccuucucucucucuauauacaccauuuaaauuuauuuuauagaguuauauacaauuugauuuugauac
(((((((((.............((((((..((((((.((((((((...((.((.(((.....(..(((((((((((((((((((((((((((((....(((..(((....(((.....))))))..))))))))))))))))))))))).)))))))))..)......))))).))....)))))))).))))))))))))..)))))))))................

Structure

----------------         auuaagagguaua      uc      a        -uug  u  u   -uaauu au         -                    ggcu   uu   uauu   u 
                guaugugau             uaugaa  auaaau uggauggu    au ga gag      g  ggUGACAGA AGAGAGUGAGCACacauggu    uuc  gca    uga g
                |||||||||             ||||||  |||||| ||||||||    || || |||      |  ||||||||| ||||||||||||||||||||    |||  |||    ||| g
                cauauauug             auauuu  uauuua auuuacca    ua cu cuc      c  CCACUGUCU UCUCUCACUCGuguguaucg    aag  cgu    acu u
cauaguuuuaguuuaa         -----------ag      --      a        caua  u  -   ucucuu cc         A                    ----   uu   ----   u 

Annotation confidence Not enough data

Genome context

GL348718.1: 11884572-11884799 [+]

Mature aly-miR156f-5p

• Accession: MIMAT0017407
• Description: Arabidopsis lyrata aly-miR156f-5p mature miRNA
• Sequence: 68 - UGACAGAAGAGAGUGAGCAC - 87
• Evidence: experimental ; Illumina [1], SOLiD [2]

Mature aly-miR156f-3p

• Accession: MIMAT0017408
• Description: Arabidopsis lyrata aly-miR156f-3p mature miRNA
• Sequence: 139 - GCUCACUCUCUAUCUGUCACC - 159
• Evidence: experimental ; Illumina [1], SOLiD [2]

References

1. PubMed ID: 20407027
   MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
   "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
   "Plant Cell (2010) 22:1074-1089


2. PubMed ID: 20407023
   Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
   "Ma Z, Coruh C, Axtell MJ"
   "Plant Cell (2010) 22:1090-1103