miRBase entry: aly-MIR156c

Stem-loop aly-MIR156c


Accession
MI0014504
Description
Arabidopsis lyrata aly-MIR156c precursor miRNA
Gene family
MIPF0000008; MIR156


Sequence

233 reads, 8124 reads per million, 1 experiments
gcauagaaacUGACAGAAGAGAGUGAGCACacaaaggcacuuugcauguucgaugcauuugcuucucuugcguGCUCACUGCUCUAUCUGUCAGAuuucggc
.....(((((((((((((((((((((((((.((((((((...(((((.....)))))..)))))...))).))))))))).)))).)))))))).))))...

Structure
gcaua    -        -    -         a   ---     cuu     g 
     gaaa cUGACAGA AGAG AGUGAGCAC caa   aggca   ugcau u
     |||| |||||||| |||| ||||||||| |||   |||||   ||||| u
     cuuu GACUGUCU UCUC UCACUCGug guu   uucgu   acgua c
--cgg    A        A    G         c   cuc     -uu     g 


Annotation confidence High
Do you think this miRNA is real?

Genome context
GL348719.1: 4138775-4138876 [+]

Database links

Mature aly-miR156c-5p

Accession MIMAT0017401
Description Arabidopsis lyrata aly-miR156c-5p mature miRNA
Sequence 11 - UGACAGAAGAGAGUGAGCAC - 30
Evidence experimental
Illumina [1], SOLiD [2]
Database links

Mature aly-miR156c-3p

Accession MIMAT0017402
Description Arabidopsis lyrata aly-miR156c-3p mature miRNA
Sequence 74 - GCUCACUGCUCUAUCUGUCAGA - 95
Evidence experimental
Illumina [1], SOLiD [2]
Database links

References

  1. PubMed ID: 20407027
    MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
    "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
    "Plant Cell (2010) 22:1074-1089

  2. PubMed ID: 20407023
    Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
    "Ma Z, Coruh C, Axtell MJ"
    "Plant Cell (2010) 22:1090-1103