miRBase entry: bta-mir-3431

Stem-loop bta-mir-3431


Accession
MI0014498
Description
Bos taurus bta-mir-3431 precursor miRNA
Gene family
MIPF0002046; mir-3431

Literature search
5 open access papers mention bta-mir-3431
(10 sentences)

Sequence

6503 reads, 105 reads per million, 68 experiments
auacccaaugaaugcgaaaaCCUCAGUCAGCCUUGUGGAUGUauguucugcagaccugacaucuagaggacugacugaaauuuucacuuucagcuaa
........((((.(.(((((..((((((((((((.(((((((..(.((....)).)..))))))))))).))))))))..))))).).)))).....

Structure
auacccaa    u c     CC        -    G       au u  u 
        ugaa g gaaaa  UCAGUCAG CCUU UGGAUGU  g uc g
        |||| | |||||  |||||||| |||| |||||||  | ||  
        acuu c cuuuu  agucaguc ggag aucuaca  c ag c
---aaucg    u a     aa        a    -       gu c  a 


Annotation confidence High
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Comments
Jin et al. predicted this miRNA bioinformatically in [1], and validated its expression by qPCR in [2].

Genome context
chrX: 34879430-34879526 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from bta-mir-3431
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bta-miR-3431

Accession MIMAT0017394
Description Bos taurus bta-miR-3431 mature miRNA
Sequence 21 - CCUCAGUCAGCCUUGUGGAUGU - 42
Evidence experimental
qPCR [2], Illumina [3]

References

  1. PubMed ID: 19758457
    Characterization of bovine miRNAs by sequencing and bioinformatics analysis
    Jin W, Grant JR, Stothard P, Moore SS, Guan LL
    BMC Mol Biol (2009) 10:90

  2. PubMed ID: 20423511
    Characterization of microRNA expression in bovine adipose tissues: a potential regulatory mechanism of subcutaneous adipose tissue development
    Jin W, Dodson MV, Moore SS, Basarab JA, Guan LL
    BMC Mol Biol (2010) 11:29

  3. PubMed ID: 21912509
    Solexa sequencing of novel and differentially expressed microRNAs in testicular and ovarian tissues in Holstein cattle
    "Huang J, Ju Z, Li Q, Hou Q, Wang C, Li J, Li R, Wang L, Sun T, Hang S, Gao Y, Hou M, Zhong J"
    "Int J Biol Sci (2011) 7:1016-1026