miRBase entry: bmo-mir-3391

Stem-loop bmo-mir-3391


Accession
MI0014454
Description
Bombyx mori bmo-mir-3391 precursor miRNA


Sequence

11 reads, 4 reads per million, 2 experiments
AGGUCGUGGUAUUUCGUACCUUCAUGGcucaguacugugcgaacggauuguuguucgucgauccguccccgguguggugcugUGACAAAAAGUGAUGUGAGUCCGUCgag
...((((((..((.(((..((((((((((((.(((((.(.(.((((((((........)))))))).)))))))))).))))))).....))..))).))..))).))).

Structure
AGG   -   UA  U   AC  -----       -   g     u c a        uug 
   UCG UGG  UU CGU  CU     UCAUGGc uca uacug g g acggauug   u
   ||| |||  || |||  ||     ||||||| ||| ||||| | | ||||||||    
   agC GCC  AG GUA  GA     AGUgucg ggu guggc c c ugccuagc   u
--g   U   UG  U   GU  AAAAC       u   -     - - c        ugc 


Annotation confidence Not enough data
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Genome context
NW_004581679.1: 3279236-3279345 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from bmo-mir-3391
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bmo-miR-3391-5p

Accession MIMAT0015594
Description Bombyx mori bmo-miR-3391-5p mature miRNA
Sequence 1 - AGGUCGUGGUAUUUCGUACCUUCAUGG - 27
Evidence experimental
SOLID [1]

Mature bmo-miR-3391-3p

Accession MIMAT0015595
Description Bombyx mori bmo-miR-3391-3p mature miRNA
Sequence 83 - UGACAAAAAGUGAUGUGAGUCCGUC - 107
Evidence experimental
SOLID [1]

References

  1. PubMed ID: 20229201
    Novel microRNAs in silkworm (Bombyx mori)
    "Cai Y, Yu X, Zhou Q, Yu C, Hu H, Liu J, Lin H, Yang J, Zhang B, Cui P, Hu S, Yu J"
    "Funct Integr Genomics (2010) 10:405-415