miRBase entry: bmo-mir-3386

Stem-loop bmo-mir-3386


Accession
MI0014447
Description
Bombyx mori bmo-mir-3386 precursor miRNA


Sequence

67 reads, 18 reads per million, 3 experiments
gaucugaaaaauuauuaaugagggcaguacggaUACCUAACCAGUUCUCUGGUAUGCCauuugaauuuaugguccuggcggcaggaccaguuauuuuauuUAAUAUACCAUUUAUUAAGCUGAGguuauuuaauucguugccaggaucu
(((((.................((((..((((((((((...(((((...(((((((......((((...((((((((....))))))))...)))).......))))))).......)))))))))......)))))))))).))))).

Structure
-     gaaaaauuauuaaugag    gu      ------    AAC     ----CUC       -CCauuu    uua        g 
 gaucu                 ggca  acggaU      ACCU   CAGUU       UGGUAUG       gaau   ugguccug c
 |||||                 ||||  ||||||      ||||   |||||       |||||||       ||||   ||||||||  
 cuagg                 ccgu  ugcuua      ugGA   GUCGA       ACCAUAU       uuua   accaggac g
u     ----------------a    --      auuuau    ---     AUUAUUU       AAUuuau    uug        g 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
NW_004582162.1: 17439-17587 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from bmo-mir-3386
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bmo-miR-3386-5p

Accession MIMAT0015583
Description Bombyx mori bmo-miR-3386-5p mature miRNA
Sequence 34 - UACCUAACCAGUUCUCUGGUAUGCC - 58
Evidence experimental
SOLID [1]

Mature bmo-miR-3386-3p

Accession MIMAT0015584
Description Bombyx mori bmo-miR-3386-3p mature miRNA
Sequence 101 - UAAUAUACCAUUUAUUAAGCUGAG - 124
Evidence experimental
SOLID [1]

References

  1. PubMed ID: 20229201
    Novel microRNAs in silkworm (Bombyx mori)
    "Cai Y, Yu X, Zhou Q, Yu C, Hu H, Liu J, Lin H, Yang J, Zhang B, Cui P, Hu S, Yu J"
    "Funct Integr Genomics (2010) 10:405-415