Stem-loop bmo-mir-3338

Accession

MI0014396

Description

Bombyx mori bmo-mir-3338 precursor miRNA

Gene family

MIPF0001449; mir-3338

Literature search

1 open access papers mention bmo-mir-3338
(1 sentences)

Sequence

accaagugacaauagagcgucucaaAGCAAACACAGUAGUGUGCAAugcuaaaguccuaacgugcAUGUACUUACUUUGUUUGUUCUgauacacucuuaugagcuuc
...((((..((..((((.((.(((.((((((((.(((((.(((((.(((..............))))))))))))).)))))))).))).)).))))..)).)))).

Structure

acc    ga  au    c  c   a        C     U     A   uaaagu 
   aagu  ca  agag gu uca AGCAAACA AGUAG GUGCA ugc      c
   ||||  ||  |||| || ||| |||||||| ||||| ||||| |||       
   uucg  gu  ucuc ca agU UUGUUUGU UCAUU CAUGU Acg      c
--c    -a  au    a  u   C        U     -     -   ugcaau 

Annotation confidence Not enough data

Genome context

NW_004582013.1: 6563758-6563864 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from bmo-mir-3338

Mature bmo-miR-3338-5p

• Accession: MIMAT0015525
• Description: Bombyx mori bmo-miR-3338-5p mature miRNA
• Sequence: 26 - AGCAAACACAGUAGUGUGCAA - 46
• Evidence: experimental ; SOLID [1]

Mature bmo-miR-3338-3p

• Accession: MIMAT0015526
• Description: Bombyx mori bmo-miR-3338-3p mature miRNA
• Sequence: 66 - AUGUACUUACUUUGUUUGUUCU - 87
• Evidence: experimental ; SOLID [1]

References

1. PubMed ID: 20229201
   Novel microRNAs in silkworm (Bombyx mori)
   "Cai Y, Yu X, Zhou Q, Yu C, Hu H, Liu J, Lin H, Yang J, Zhang B, Cui P, Hu S, Yu J"
   "Funct Integr Genomics (2010) 10:405-415