miRBase entry: bmo-mir-3336

Stem-loop bmo-mir-3336


Accession
MI0014394
Description
Bombyx mori bmo-mir-3336 precursor miRNA


Sequence

10 reads, 4 reads per million, 3 experiments
cuugcuuaaggcauagacacagcuuggggguuccgucgcguccuuaacacgcgaacauUCUGUGGUUGCGUGAUCGCCGAGgcau
..(((((..(((....((.(((((..(((((....((((((.......))))))..)))))..))))).))....))).))))).

Structure
cu     aa   auag  a     ug     uccg      cc 
  ugcuu  ggc    ac cagcu  ggggu    ucgcgu  u
  |||||  |||    || |||||  |||||    ||||||  u
  acgGA  CCG    UG GUUGG  UCUua    agcgca  a
-u     -G   CUAG  C     UG     --ca      ca 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
NW_004581884.1: 20079-20163 [+]

Database links

Mature bmo-miR-3336

Accession MIMAT0015523
Description Bombyx mori bmo-miR-3336 mature miRNA
Sequence 59 - UCUGUGGUUGCGUGAUCGCCGAG - 81
Evidence experimental
SOLID [1]

References

  1. PubMed ID: 20229201
    Novel microRNAs in silkworm (Bombyx mori)
    "Cai Y, Yu X, Zhou Q, Yu C, Hu H, Liu J, Lin H, Yang J, Zhang B, Cui P, Hu S, Yu J"
    "Funct Integr Genomics (2010) 10:405-415